DreEX0002291 @ danRer10
Exon Skipping
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53097754-53167667:+
Coord C1 exon
chr3:53097754-53098226
Coord A exon
chr3:53143301-53143566
Coord C2 exon
chr3:53167527-53167667
Length
266 bp
Sequences
Splice sites
3' ss Seq
CTATCTGTCCTTTCCTGTAGAGA
3' ss Score
11.14
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGGAAATCAGTCGCTTGCGGAGCGCGTCAGCCAGAACGATGTGGACTCTGAAGCGGGGTCGAAAACAGTGAAACCATCTCCAGGAATACCGCTAAATCTGTCGCTCCGCTAGACTAAAACAACTCTACACACCCGCCAGCTCCATTGGATGTATATAAAGAAAACCGGGAAAGGATTATATAGTACAAGACTTTATTTTTCGCCGCAACGCTGACCGAGATATCGGCCTCTCGCAGTCCCAATGCTGTGCTCGCGTGAAAGAGAAAGGATGAGTGTTTGATTTCGGCTTCGCATCGGCTTCCTCTCGTTTTCCCGGCCCGTCTGTGTGTTTGGACGTACTATGGTGGACTCCAATGCAATGAGGAAGACTTTTGTGGTCCCGGACATCAAGCCATTGGATCAGTATGACCTGACCAGAGCCAGGATCTGCGCCAGTGTCGGGTGGCTGCTGGCGAAATCCTACAGCAATGCAG
Seq A exon
AGAATGTCCCGGTGGAGCTGCGAGACCCGTTCTATTGTGATCAGTATGAGCAAGAGCACCTGAAGCCCCCTGTTACGCGTCTGCTGCTGTCTCCTGAACTCTACTGTCGCACTTATGGTCTTCTGCTGGGTGGGAGCCCGGGGGCCGAGGGGCCGCCCAAAGACATCCCAGCACTCTTACAGCTCCTGGGCCGAAAGGGCTTGGCACCCAAAGACCAGAATGTACCAGTGACAGAGTCAGAGCTCCGACAGAAGCCCATCAAAATG
Seq C2 exon
AGTGCCCACTTGGAGTTGATAGATGCCTTAATGGCAGTGGGTGCCATGGAGACGGTGAGCACAGTCTTGGCGAGGAGCGGATCGGAGTTATTGGGTACAGATACGACATGGGACAGAGCCCTGCTTTGCTGGGTGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.124 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(6.2=19.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTGTGTGTTTGGACGTA
R:
ATCTTCACCCAGCAAAGCAGG
Band lengths:
296-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]