DreEX0002804 @ danRer10
Exon Skipping
Gene
ENSDARG00000104358 | CLASP1 (2 of 2)
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr11:43706337-43712407:-
Coord C1 exon
chr11:43712201-43712407
Coord A exon
chr11:43710768-43710884
Coord C2 exon
chr11:43706337-43710258
Length
117 bp
Sequences
Splice sites
3' ss Seq
TAGCATTGTGTGTGTTGCAGGGC
3' ss Score
8.28
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTGGTCCGGGCTGCTGAGGAAACAGCCTGTACTCTGGCGGGCTCCATTCACTCAGAGCAGTGCATTAAAGTGCTGTGCCCAATCATCCAGACCGCAGACTATCCCATCAGCCTCTCTGCCATCAAGATGCAGACCAGAGTCATCGAGCGCATCTCCCATGATTCCCTGCTGCAGCTGCTGCCCGACATCATCCCGGGACTCTTACAG
Seq A exon
GGCTATGATAACACCGAGAGCAGTGTACGGAAGGCCAGTGTGTTTTGTTTGGTGGCCATTTATTCAGTGATTGGTGAAGATCTGAAGCCTCATATACAGCAGCTGACCGGCAGCAAG
Seq C2 exon
ATGAAGTTACTGAATCTGTACATCAAGCGAGCTCAAACCATCAACAGCACCAGCAGCAGCTCTTCAGACGTGTCGGCACACAGCTGAACACATTAGACTGTAAAATGGACACACACACACACACACGCAAACACACACACTTCAACGCTTCATCTGTCCTCCACACACTTCATCAAATGCTTTATTACAGTGACCACGACTGTATGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTATGCAGTGTGCATGTGAGTCTACATCTGTGAGTGTGTGAATCTGTGCATGTCCCTGAAATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGTATGTGTGTGTGCGTGCGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTTCATGTTTGTTAGAGTATATATCTGTGTTTGAGAGAGTGTAAAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTCTGTGCATATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104358_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF102744=ParcG=PU(46.5=77.9)
A:
PF102744=ParcG=FE(36.0=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCATCCAGACCGCAGAC
R:
GTGTGTGTGTGTGTGTGTCCA
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]