DreEX0002835 @ danRer10
Exon Skipping
Gene
ENSDARG00000079483 | CLIP1 (2 of 2)
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr10:44683170-44686850:-
Coord C1 exon
chr10:44686790-44686850
Coord A exon
chr10:44684524-44684628
Coord C2 exon
chr10:44683170-44683298
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTGTCTACTAACAGACG
3' ss Score
8.59
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
AAAAGTGGAGGATCTGCAGTTTCGGGTGGAGGAAGCGTGCATTACCAAAGGAGACCTGGAG
Seq A exon
ACGCAGACCAAACTGGAGCATGCCCACATTAAGGAGCTCGAACAGAGTCTTCTCTTTGAAAAGACCAAAGCAGATAAACTGCAGAGGGAGTTAGAGGATACTAGG
Seq C2 exon
GTGGCCACAGTATCGGAGCGCTCCAGGATTATGGAGCTGGAGAAGGAGGTGTCTGATCTGCACCTTCAGCTCCGCACGCTGCGGGCCGAGACCTCCGGATCCGCATCTCCACCCCTGCAGGACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079483_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.257 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGATCTGCAGTTTCGG
R:
CTTTTTGTCCTGCAGGGGTGG
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]