DreEX0003162 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13386954-13397742:+
Coord C1 exon
chr1:13386954-13387485
Coord A exon
chr1:13391327-13391428
Coord C2 exon
chr1:13397644-13397742
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGTTGGTTTGATTCTACAGTCG
3' ss Score
6.35
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CAAAACCGGAAAAGCAAAGGAGACAAGGGATCAACTCCAACACGGGTCGAAGATTCTCACTGAAGGCGTGGGGCAGGGATCAGAAAGAGCACATAAGAGATGATGTTTGGGACCTGAGGAGAAAGATAGACATGAAAGTTTGGGGGATTTTGCATTAGCTGGATAGATGCTCTGAAGCTGATAATTGAATGGGCTCCTGGGTACTACCTGAAGACTGAGGATAATGCAAACCCATAAAGCTAAGTGCATGTGAGCCAGTTAGAATCAATCTCCAAAGGAACGGTCTGATGTTTGGTGGCTGGTTGTCACTGAAAAAGACACAGCAAGTGAGGGGAATACACTGATGTAAAGTGTGGTGCTGCATTTTGCAAAGCTTTGGATCACTATTTACCATGGGCAATGCTGCAATGTGTAGGGTGTGTGGTTCTAATAAAGGCCTGCGGACTATTGGAAGTGATCCATATCTGGAGCGTTACTACAACTATGAGACGGATACTATG
Seq A exon
TCGGACAGTAACACCAGCTTCCTGCGAGCAGCCCGGGCAGGCAACATTGAAAAGGTGCTTGAGTTCCTCAAGAGCGGACAAGACATTTCGACATGCAACCAG
Seq C2 exon
AACGGACTCAATGCGCTTCATCTCGCAGCCAAAGAGGGTCACGTGGAGCTGGTGGAGGAGCTTCTGGAGAGAGGGGCGGCTGTGGACTCCTCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTGGTGCTGCATTTTGC
R:
CTTGGTTGAGGAGTCCACAGC
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]