DreEX0009941 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15544184-15554183:+
Coord C1 exon
chr2:15544184-15544325
Coord A exon
chr2:15547186-15547325
Coord C2 exon
chr2:15554056-15554183
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACTATTTCTCTCCTACTCAGACT
3' ss Score
7.52
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCATTTTCCCAGCAAGGCTATGCCCTCAGCAGGAATCCTGCCTTGGATCCAAGGGATTTTCTGCAACGCTAATAACCCGTGTTTTCGCCATCAAACTCGAGGAGAATCGCCTGGGGTCGTTTCCAACTACCACAACTCCAT
Seq A exon
ACTGGCTCGGTTTTACCTGGACTCTCAAGAGCTGCTGTTTAACGACACTGAGTTCCTTCAGCTCGGCCGTCTGTGGCGTGAAGCCTCCATCATGAGCAACTTCATGGAGACTCTACGCACCAGTCCTGAGCGTGTGGCAG
Seq C2 exon
GTAAAGGGCTGAAGGTGGAGGACATACTGAAAGACGATGAGACTTTAACAGCATTCCTACTGCGAGACGCGAGGCTTTCAGAAGGTGTTGTGCACGATCTCACTAATGCACAGATTCGGGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTTCCCAGCAAGGCTATGC
R:
TGCATTAGTGAGATCGTGCACA
Band lengths:
250-390
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]