GgaEX6044214 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12609738-12614618:+
Coord C1 exon
chr8:12609738-12609879
Coord A exon
chr8:12611828-12611967
Coord C2 exon
chr8:12614491-12614618
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTGCCTATTTCTTCTTTCAGTCT
3' ss Score
8.93
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCACTTCCCAAATAAGGCAATGCCATCTGCAGGAACACTGCCGTGGCTACAAGGCATCTTCTGTAACATGAACAACCCTTGTTTCCGCAGCCCAACCCGTGGGGAGGGTCCAGGTGTTGTGTCCAACTACAACAATTCCAT
Seq A exon
TCTTGCAAGAGTATATAGAGATGCTCAGGAGCTCTTACTGGAAGCCCCTGAAATCCATGACCTTGGCAGAGTCTGGGAAGAACTGATCATTATGACTCAGTTTATGGAAACAATGAGAACAAATCCTGAAAGAATTGCAG
Seq C2 exon
GAAGAGGAATAAGAATTCTAGACATTTTGAAAGATGGGGAGACTCTCACTTCCTTCTTACTGGAAAATGTTGGCCTCCCTGATGCAGTTGTTTTCCAGCTTGTTAATGCTCAAGTGCGCCCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTTCCCAAATAAGGCAATGC
R:
ACAAGCTGGAAAACAACTGCA
Band lengths:
245-385
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]