RnoEX0004865 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225654229-225663341:+
Coord C1 exon
chr2:225654229-225654370
Coord A exon
chr2:225655361-225655500
Coord C2 exon
chr2:225663214-225663341
Length
140 bp
Sequences
Splice sites
3' ss Seq
TATATTTTTCCTTTCAACAGCTT
3' ss Score
9.14
5' ss Seq
CAGGTCACC
5' ss Score
2.64
Exon sequences
Seq C1 exon
GCCACTTTCCCAACAAGGCGATGCCTTCAGCAGGAATGTTACCATGGCTCCAGGGGATTTTCTGCAATATGAACAACCCTTGTTTTCAAAACCCCACCCCTGGAGAATCTCCCGGAACTGTATCAAACTATAATAATTCCAT
Seq A exon
CTTGGCAAGACTATATCGAGATTTTCAAGAGCTCTTCATGGACACACCGGAGGTCCAGCGTCTTGGCCGGGTTTGGACAGAGCTCCGCACCTTATCTCAGCTCATGGACACCCTGCGGACTCACCCTGAGAGATTTACAG
Seq C2 exon
GAAGAGGATTACCAATCCGAGACATCCTGAAAGATGAAGAGACACTGACACTATTTCTCAAGAAAAACATTGGCCTGTCTGACTCAGTTGCCTATCTTCTGGTCAACTCCCAAGTTCGTATGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCCCAACAAGGCGATGC
R:
ACGAACTTGGGAGTTGACCAG
Band lengths:
258-398
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]