RnoEX6011371 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225652975-225655500:+
Coord C1 exon
chr2:225652975-225653068
Coord A exon
chr2:225654229-225654370
Coord C2 exon
chr2:225655361-225655500
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTCCTGTCTTAAGGCC
3' ss Score
8.19
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATTCGCTTTGTAGTGGAACTCGTGTGGCCTTTGTCTTTGTTTTTGGTGTTAATCTGGCTGAGGAATGCCAACCCCCTCTACAGTCAACATGAAT
Seq A exon
GCCACTTTCCCAACAAGGCGATGCCTTCAGCAGGAATGTTACCATGGCTCCAGGGGATTTTCTGCAATATGAACAACCCTTGTTTTCAAAACCCCACCCCTGGAGAATCTCCCGGAACTGTATCAAACTATAATAATTCCAT
Seq C2 exon
CTTGGCAAGACTATATCGAGATTTTCAAGAGCTCTTCATGGACACACCGGAGGTCCAGCGTCTTGGCCGGGTTTGGACAGAGCTCCGCACCTTATCTCAGCTCATGGACACCCTGCGGACTCACCCTGAGAGATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGCTTTGTAGTGGAACTCGT
R:
CTGTAAATCTCTCAGGGTGAGTCC
Band lengths:
234-376
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]