MmuEX6073828 @ mm9
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121755820-121758375:+
Coord C1 exon
chr3:121755820-121755913
Coord A exon
chr3:121757110-121757251
Coord C2 exon
chr3:121758236-121758375
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTCCTGTCTTAAGGCC
3' ss Score
8.19
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATTCGCTTTGTAGTGGAACTCGTGTGGCCTTTGTCTTTGTTTTTGGTGTTAATCTGGCTGAGGAATGCCAACCCACTCTATAGTCAGCATGAAT
Seq A exon
GCCATTTTCCCAACAAGGCGATGCCTTCAGCAGGACTGTTACCGTGGCTCCAGGGGATTTTCTGCAATATGAACAACCCTTGTTTTCAAAACCCCACCCCTGGAGAGTCTCCTGGAACTGTCTCAAACTATAACAACTCCAT
Seq C2 exon
CTTGGCAAGAGTATATCGAGATTTTCAAGAACTCTTCATGGACACCCCGGAGGTCCAGCACCTTGGCCAGGTTTGGGCCGAGCTCCGCACCTTGTCGCAGTTCATGGACACCCTGAGGACTCACCCTGAGAGATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGCTTTGTAGTGGAACTCGT
R:
CTGCAAATCTCTCAGGGTGAGT
Band lengths:
234-376
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: