BtaEX6016528 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49551718-49556034:+
Coord C1 exon
chr3:49551718-49551811
Coord A exon
chr3:49553192-49553333
Coord C2 exon
chr3:49555895-49556034
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTCCTTTCTTAAAGGCC
3' ss Score
10.47
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATTCGCTTTGTGGTGGAACTCGTGTGGCCTTTATCTTTATTTCTGGTCTTGATCTGGTTAAGGAATGTCAACCCCCTCTACAGCAAACATGAAT
Seq A exon
GCCATTTTCCCAACAAGGCGATGCCCTCAGCAGGAATGTTGCCATGGCTCCAGGGAATTTTCTGCAATGTGAACAATCCTTGTTTTCAAAGTCCCACTGCAGGAGAATCTCCTGGAATTGTGTCAAACTATAACAACTCCAT
Seq C2 exon
CTTGGCAAGGGTGTATAGAGATTTTCAAGAACTCCTCATGGATGCACCAGAGAGCCAGCACCTTGGTCAGGTTTGGAGAGAACTCCGCACCTTGTCCCAGCTCATGAACACCCTCCGAATGCACCCCGAGAGGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'1-2,'1-1,2-2=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGCTTTGTGGTGGAACTCG
R:
CTGCAATCCTCTCGGGGTG
Band lengths:
234-376
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]