GgaEX6044215 @ galGal3
Exon Skipping
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14358110-14361400:+
Coord C1 exon
chr8:14358110-14358203
Coord A exon
chr8:14359171-14359312
Coord C2 exon
chr8:14361261-14361400
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCCATCCTCCAGGTC
3' ss Score
11.61
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CTTCGTATTCTGGTGGAGCTTATATGGCCTCTGTCATTATTTCTTGCCCTGGTCTGGCTGAGGAAAGCTAATCCACTGTATCGCCAACATGAAT
Seq A exon
GTCACTTCCCAAATAAGGCAATGCCATCTGCAGGAACACTGCCGTGGCTACAAGGCATCTTCTGTAACATGAACAACCCTTGTTTCCGCAGCCCAACCCGTGGGGAGGGTCCAGGTGTTGTGTCCAACTACAACAATTCCAT
Seq C2 exon
TCTTGCAAGAGTATATAGAGATGCTCAGGAGCTCTTACTGGAAGCCCCTGAAATCCATGACCTTGGCAGAGTCTGGGAAGAACTGATCATTATGACTCAGTTTATGGAAACAATGAGAACAAATCCTGAAAGAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTATTCTGGTGGAGCTT
R:
CTGCAATTCTTTCAGGATTTGTTCT
Band lengths:
234-376
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]