GgaEX6044215 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12608677-12611967:+
Coord C1 exon
chr8:12608677-12608770
Coord A exon
chr8:12609738-12609879
Coord C2 exon
chr8:12611828-12611967
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCCATCCTCCAGGTC
3' ss Score
11.61
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CTTCGTATTCTGGTGGAGCTTATATGGCCTCTGTCATTATTTCTTGCCCTGGTCTGGCTGAGGAAAGCTAATCCACTGTATCGCCAACATGAAT
Seq A exon
GTCACTTCCCAAATAAGGCAATGCCATCTGCAGGAACACTGCCGTGGCTACAAGGCATCTTCTGTAACATGAACAACCCTTGTTTCCGCAGCCCAACCCGTGGGGAGGGTCCAGGTGTTGTGTCCAACTACAACAATTCCAT
Seq C2 exon
TCTTGCAAGAGTATATAGAGATGCTCAGGAGCTCTTACTGGAAGCCCCTGAAATCCATGACCTTGGCAGAGTCTGGGAAGAACTGATCATTATGACTCAGTTTATGGAAACAATGAGAACAAATCCTGAAAGAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTATTCTGGTGGAGCTT
R:
CTGCAATTCTTTCAGGATTTGTTCT
Band lengths:
234-376
Functional annotations
There are 1 annotated functions for this event
PMID: 11320094
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000561; ELM sequence: YNNSIL; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]