DreEX0013076 @ danRer10
Exon Skipping
Gene
ENSDARG00000074777 | ank1b
Description
ankyrin 1, erythrocytic b [Source:ZFIN;Acc:ZDB-GENE-091113-6]
Coordinates
chr21:21017329-21020771:-
Coord C1 exon
chr21:21020708-21020771
Coord A exon
chr21:21018974-21019086
Coord C2 exon
chr21:21017329-21017553
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCACTCCTGCGTGTCTGCAGCAC
3' ss Score
8.72
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
ACCGTACTCACCTGCAATTCCCAGAATTCCATGCGTGTCACCTGAAACTGTCATGTTGGACCAG
Seq A exon
CACACACCTGTCCCTTTGCCAAAGGAGTATGACGAGGACTCTCTAATCCCCAGTAGTCCTGCCACAGAGACCTCAGACAACGTTAGCCCAGTGGCCAGCCCCATCCACACTGG
Seq C2 exon
GTTTCTGGTCAGCTTCATGGTGGATGCGAGAGGCGGGTCAATGCGGGGCAGCAGACATAATGGTCTGCGTGTGATCATACCACCGCGCACCTGTGCTGCCCCGACACGCATCACCTGCCGTCTAGTCAAACCGCAGAAACTCACCACTCCTCCGCCTCTGGTGGAGGGAGAAGGACTCGCATCTCGTATTATCTCTCTAGGGCCTTCCAGCATGCAGTTTCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074777_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.763 C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=2.6)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTACTCACCTGCAATTCCC
R:
AGATGCGAGTCCTTCTCCCTC
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]