DreEX0013102 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20783933-20877630:-
Coord C1 exon
chr17:20877349-20877630
Coord A exon
chr17:20787101-20787202
Coord C2 exon
chr17:20783933-20784031
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTATTACTTGCAGTCG
3' ss Score
7.08
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CGAGTCTTCTAAAAACACAGAGTGAGAGAGAGTTCAGAGAGAGAAAGAGAGAGAGAGAGAGAACGCGAGCGTTTGCGCGCCTCTCAGCATCTCCCCCATAAACAAACACCATCAGCGGAGCTTTAATGGACTTCTCTGCCTGGTCCATGCTGATCGGAGTGGATGTTGGAATAAGGAGGATCGCTCAGGGAGTCTGATCCCATCAGCTTTCCCAAAATGAGTGAAGAAGCCAAAGAAAAAAGTAGCTCCAAACCAGCTCACCGTAAAAAGAAAGGAAAGAAG
Seq A exon
TCGGACAGCAATGCCAGTTACCTGCGGGCAGCGAGGGCTGGGAACCTTGAGAAGGTCCTCGATTACTTGAAGACTGGTGTCGATATCAACATCTGTAATCAG
Seq C2 exon
AATGGGTTGAATGCATTGCATCTGGCTTCCAAAGAGGGGCATGTGGAGGTGGTGGCGGAGCTACTAAAACTGGGTGCCAATGTAGATGCAGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-'0-3,'0-2,5-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(29.0=79.4)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCAGCATCTCCCCCATA
R:
CCACATGCCCCTCTTTGGAAG
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]