DreEX0018198 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18985762-18992528:-
Coord C1 exon
chr25:18991776-18992528
Coord A exon
chr25:18986025-18986106
Coord C2 exon
chr25:18985762-18985878
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTGTTTTGTCTATAGGGT
3' ss Score
9.55
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGATGTCATTCTTTGAGGATGAGATGATGAAGTTCAACTTAAAACATTGATATCATGATTTCGACCAGTAGGAAGAGCAAGCTAACGATGACATTAAGTGGATTATTTGGATTATCTGTATCATCCTGAATATGAGAAGTGTTTGTTACTTCAGGCAGCTCACTAGGACTTTGAGAAGTTTCTGGAATATCTGAGGATGACAGGAATCAACTTCTGGATTGATGAGGAGTTCAGAAGGGTCCTAAGAGACGTTTAAGACCATCTAGGTCAATATGAATGGAAGCCATTGGATTGAAAATTGGTGTTTATTTAAGACACTGGAGTAGTGGATTCTTAGACTTCTTCTCATGACTTCATTATACTTTTGTGGCCTTTAAGGATCCAGTAGGTGCCAGCATCATGTGTCACATCAGAAGGTCTTCCTGGGTCACATTTCTGTTGCTCTCCACAGGCTGGATGTGCATGTTTACTCATGCCCAAATGAAGATTCCACCTGAAAC
Seq A exon
GGTTCAGAAATGGGCCCTCACCATTTCAGAGCAAATCAATGCAATTGCATCAAAGTATTCAGGAGCTGCTCTCTTTCAAAAG
Seq C2 exon
AAACTTAAAGATGTTGAGCCCATCATCAGAATAGAGGACTTGGATGGATCCGAATTAGTGCTAGAATTTGCAGAAGAAATCGAAAGAATGCTCGGCAGCAAGATGAGGTCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGTTGCTCTCCACAGGC
R:
TTGCTGACCTCATCTTGCTGC
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]