DreEX0018205 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18979278-18992528:-
Coord C1 exon
chr25:18991776-18992528
Coord A exon
chr25:18985131-18985190
Coord C2 exon
chr25:18979278-18979338
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATAATTCTCTTTGTTCTCAGAGG
3' ss Score
8.18
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGATGTCATTCTTTGAGGATGAGATGATGAAGTTCAACTTAAAACATTGATATCATGATTTCGACCAGTAGGAAGAGCAAGCTAACGATGACATTAAGTGGATTATTTGGATTATCTGTATCATCCTGAATATGAGAAGTGTTTGTTACTTCAGGCAGCTCACTAGGACTTTGAGAAGTTTCTGGAATATCTGAGGATGACAGGAATCAACTTCTGGATTGATGAGGAGTTCAGAAGGGTCCTAAGAGACGTTTAAGACCATCTAGGTCAATATGAATGGAAGCCATTGGATTGAAAATTGGTGTTTATTTAAGACACTGGAGTAGTGGATTCTTAGACTTCTTCTCATGACTTCATTATACTTTTGTGGCCTTTAAGGATCCAGTAGGTGCCAGCATCATGTGTCACATCAGAAGGTCTTCCTGGGTCACATTTCTGTTGCTCTCCACAGGCTGGATGTGCATGTTTACTCATGCCCAAATGAAGATTCCACCTGAAAC
Seq A exon
AGGCTTGCAGACACCGCTGAGGATGCTGACCTGTATCATGAATTTAATTCATCTTTACAG
Seq C2 exon
GAATCCGATGGACCCCTGATGCTAACGGTGTTGTGTCTTTTGACTGCAGAAACAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=PD(2.6=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTAGGTGCCAGCATCATG
R:
GTTAGCATCAGGGGTCCATCG
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]