BtaEX6024826 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108791266-108793815:-
Coord C1 exon
chr5:108793699-108793815
Coord A exon
chr5:108792106-108792165
Coord C2 exon
chr5:108791266-108791428
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCCTCGTGTCCCCACCGCAGAAT
3' ss Score
9.49
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AAATACAAGGACGTGGAGTCCAGTCTGAAGATCAAGGAGGTGGACGGCTTGGAGCTGGTGAGGAAGTTCTCAGAGGACATGGAGACCATGCTCCGCAGGAAAGTGGAGGCTGTCCAG
Seq A exon
AATCTGGTGGAGGCTGCCGAGGAGGCCGACCTGAACCACGAATTCAACGAGTCCCTGGTG
Seq C2 exon
TTCGACTATTACAACTCCGTCCTCCTCAACGAGAAGGACTCGAGCGGGGCATATGTGGAGCTGGGGGCCGAGTTCCTCCTAGAGGCCAACGCGCACTTCAGCGACCTGCTGGTGAACACGACCCTGAGCAGCGTGCAGCTGCCCACCAACGTCTACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGAGTCCAGTCTGAAGA
R:
TTCTCGTTGAGGAGGACGGAG
Band lengths:
142-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]