MmuEX6006568 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119240665-119242940:+
Coord C1 exon
chr6:119240665-119240781
Coord A exon
chr6:119241153-119241212
Coord C2 exon
chr6:119242778-119242940
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTTTGCGCCCCCTCCCTCAGAGC
3' ss Score
10.3
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AAGTACAAGGATGCAGAACCCAGTCTGAAGATCAAAGAGGTGGATGGCTTGGAGCTGGTGAAGAAGTTCTCGGAGGACATGGAGACCATGCTTCGGAGGAAAGTCGAGGCTGTTGAG
Seq A exon
AGCCTGGTGGAGGCCGCTGAGGAGGCTGACCTGAATCATGAGTTCAATGCATCTCTGGTG
Seq C2 exon
TTTAACTACTACAACTCGGTACTAATCAATGAGAAGGATGACAAGGGCAACTACGTGGAGCTGGGAGCTGAGTTTCTTCTCGAGTCCGACGCGCACTTCAGCAACCTGAGGGTGAATGTCTCCATGAGCAGCGTTCAACTGCCCACCAACGTGTACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=FE(46.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGGAGCTGGTGAAGAAG
R:
CTCCACGTAGTTGCCCTTGTC
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types