GgaEX1012532 @ galGal3
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
NA
Coordinates
chr1:63208468-63211844:-
Coord C1 exon
chr1:63211728-63211844
Coord A exon
chr1:63210198-63210257
Coord C2 exon
chr1:63208468-63208630
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCTTTATCTGTTTGCATTAGAGG
3' ss Score
5.45
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAGTACAAAGACGTGGAGCCGACCCTGAAGATCAAAGAGGTGGATGGCCTGGAGCTTGTGAAGAAGTTCTCAGAGCAGATGGAAAGCATGCTCCGCAGGAAGGTGGAAGCTGTTGAG
Seq A exon
AGGTTGGTGGAAGCAGCAGAGGATGCAGATCTGAACCATGAGTACAACTCCTCACTGGAG
Seq C2 exon
TTTGATTACTACAACTCCCTCCTGATTAATGAGAAGGATGAAAATGACAATTATGTGGAGCTTGGCGATGAATTCATTCTGGAGCCAAATGAGCATTTCAATAACCTGCTGGTAAACACAACATACAGTGATATCCAGCTCCCTACCAACGTCTACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=FE(46.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGAGCTTGTGAAGAAG
R:
AATTCATCGCCAAGCTCCACA
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]