GgaEX1012532 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61214396-61217772:-
Coord C1 exon
chr1:61217656-61217772
Coord A exon
chr1:61216126-61216185
Coord C2 exon
chr1:61214396-61214558
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCTTTATCTGTTTGCATTAGAGG
3' ss Score
5.45
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAGTACAAAGACGTGGAGCCGACCCTGAAGATCAAAGAGGTGGATGGCCTGGAGCTTGTGAAGAAGTTCTCAGAGCAGATGGAAAGCATGCTCCGCAGGAAGGTGGAAGCTGTTGAG
Seq A exon
AGGTTGGTGGAAGCAGCAGAGGATGCAGATCTGAACCATGAGTACAACTCCTCACTGGAG
Seq C2 exon
TTTGATTACTACAACTCCCTCCTGATTAATGAGAAGGATGAAAATGACAATTATGTGGAGCTTGGCGATGAATTCATTCTGGAGCCAAATGAGCATTTCAATAACCTGCTGGTAAACACAACATACAGTGATATCCAGCTCCCTACCAACGTCTACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGAGCTTGTGAAGAAG
R:
AATTCATCGCCAAGCTCCACA
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]