RnoEX0016159 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151302474-151328221:+
Coord C1 exon
chr4:151302474-151302590
Coord A exon
chr4:151302962-151303021
Coord C2 exon
chr4:151328161-151328221
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTGGTGCTCCCTCCCTCAGAGC
3' ss Score
10.22
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AAGTACAAGGATGCAGAACCCAGTCTGAAGATCAAAGAGGTGGATGGCTTGGAGCTGGTGAAGAAGTTCTCAGAGGACATGGAGACCATGCTTCGGAGGAAAGTTGAGGCTGTGGAG
Seq A exon
AGCCTGGTGGAGGCCGCTGAGGAGGCTGACCTGAACCATGAGTTCAATGCGTCTCTGGTG
Seq C2 exon
GGATAAAGTGGACACCTGATGAAAATGGAGTCATCGCCTTCGACTGCAGAAACCGTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083996=VWA_N=PU(12.0=70.0)
C2:
PF083996=VWA_N=PD(2.6=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTTGGAGCTGGTGAAG
R:
CACGGTTTCTGCAGTCGAAGG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]