DreEX0018691 @ danRer10
Exon Skipping
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4578078-4596672:-
Coord C1 exon
chr21:4596515-4596672
Coord A exon
chr21:4584075-4584337
Coord C2 exon
chr21:4578078-4578239
Length
263 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGTGTCCTAGAGC
3' ss Score
10.07
5' ss Seq
ATGGTGCGG
5' ss Score
5.75
Exon sequences
Seq C1 exon
GATGGATGTAGGAGCGCTTGCAGCTGGGGATGGTGGCCCGAGAAGAGCGGATTCGGTTGAGGGAGGGCTTGAAATCGCACCACTGGAAATGTACGACTCGGCCCGAGCAAAAATAGAAGCAAACCTCCGCTGGTTGTTCGCCAAAGCATATGGTGAAG
Seq A exon
AGCACATCCCGGAGGACCTGCGGGACCCGTTCTACACGGATCAGTACTGCGTGGAGCACATTAAGCCACCGGTGCTGTGTCTGCTGCTGTCCTCCGAGCTCTACTGCCGTGTGTGTGGACTCCTGCTGAAGGGCGATCAGGCGTCTGCGCTCAGCTCCCATCAGGCTGTTCTGCAGACGCTCGCTCGTCGAGGCATCAGTGTCAGAGAGCCTGACGACACGCCGGTGACACATGACGACCTCACGTCCACTCCCATTAAGATG
Seq C2 exon
AGTGCTCATATCCCGCTGATTGACGCTCTTATGATGGCCTATACGGTGGAGATGATGCCTATTGAGAGAGTGGTGGCGAGCGTTAAGCGGTTCTCCACCTTCTGCGCCTCTAAAGAGCTTCCCTTCGACATGGAGGATGCAGCGCTCTTCTGGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208-'1-4,'1-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(5.7=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGATGTAGGAGCGCTTGC
R:
TCCATGTCGAAGGGAAGCTCT
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]