DreEX0018712 @ danRer10
Exon Skipping
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22351088-22391772:-
Coord C1 exon
chr22:22391221-22391772
Coord A exon
chr22:22372232-22372491
Coord C2 exon
chr22:22351088-22351249
Length
260 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTGTCACCTCACAGACA
3' ss Score
9.45
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
TAACCGTAAATATCCAGATAGTAATAAGTGGGCAGAGCATGGCGAGCTCTTAAAGAAGACAAAGACGGCTTTAGATAGCGACTCTTTGACTTTGGGACATGGAGGTTTATTAAGGCGAAAAGCGGCCGAATTCAAATGGGGTACCAGAATGGATGAGGCTCAATGGGCAGAACCCCACTTTTACCGGATCGGGCCGAAATTGATGTGAAAATAATCCCAACCGAGTGTTTTAACAGCATCCCAGCACACTTATGTTAGAAAACCTGACATGTATGTGTAGGAAAAGAAGCCAAAAGTGATATTTGTTGCAGTGAATTCCTTCGGAGAGATGTCATCGTTGTGAACGCTGGATGTTGTGAATATGGGAGATCTGAGCGAGTCCAGAGACCCGAGAAAGACTTTCATTGTTCCTGCCATCAAGCCTTTCGATCATTATGATTTTACCAGAGCTAAAATCAGAGCCAGCCTCACATGGCTAGTGGCCAAAGCCTTCGGTACAG
Seq A exon
ACAGTGTTCCTGAAGAGCTGAACGAGCCCTTCTACAAGGACCAGTATGAGCAGGAGCACCTGAAGCCTCCGGTGGCTGATCTGCTGCTGTCAGCGGAGCTCTACTGCAGAGCTGGAAGTCTGATCCTGAAGAGCGACGCTGTCAAACCTCTCCTGGGCCACGATGCGGTCATCCAGGCTCTGGCGCAGAAGGGCCTTTACGTCACCGACCAGGAGAGACTTGTGACTGAGAGAGACCTGCAGAAGAAACCTATTCAGATG
Seq C2 exon
AGCGCCCACCTGGCCATGATCGACACTCTGATGATGGCGTATACAGTGGAGACGGTGAGCGTGGAGAAGGTGATGGCCTGCATGCACCAATACTCCACCGATTATCCAGACGGAGACGTGCCCTACGACACAGAGGATGCCGTCACCAGCTGGATGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.057 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
PF102214=DUF2151=PU(26.1=34.5)
C2:
PF102214=DUF2151=FE(46.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACGCTGGATGTTGTGA
R:
CATCCTCTGTGTCGTAGGGCA
Band lengths:
301-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]