MmuEX0009006 @ mm9
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138200872-138242681:-
Coord C1 exon
chr1:138241876-138242681
Coord A exon
chr1:138221314-138221573
Coord C2 exon
chr1:138200872-138201033
Length
260 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTTAACCTTTATAGAAA
3' ss Score
7.3
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGCGTGCGCGCTCCGCCATGGCGGGGACACTGTCCGCGACGTGATCGTCCAGGCTGCCCCCGCCCGAGCATTCCGGGCCCTCTCAGCCGCCACCCTCCTGCGAGCCCGTGTGACTAAACGGAGACAAAGGGGAGGCGGAGGGGCAGACCCGGGCCGGAGCGAGCGCGGCCGGGTGCCGCCTCACGTCTATGCCCGGGGCCGCGGCGGCTCCCGCGGGCGGCGGACTCGCGACGAGCACAGCTGAGCTTTTCCGTGCCCGGCGCCCGGGAGGGCCGCGACCGGCGCGGACGATCTGAACTCCTCTCTCCGCCACACCATGTGAAGGCCGTCGTCCCTCCATCCCAACCAGCCGCCGTGAAAGATGGGGGATGCTGCAGACCCGCGGGAGATGAGAAGGACGTTCATTGTTCCAGCCATCAAACCCTTTGACCACTATGACTTCTCCAGGGCCAAAATCGCCTGCAATCTGGCCTGGCTGGTGGCCAAAGCCTTTGGGACAG
Seq A exon
AAAATGTGCCCGAGGAGCTTGGCGACCCATTTTACACAGACCAGTATGACCAGGAGCACATCAAACCCCCTGTCGTTAACCTGCTTCTGTCGGCCGAGCTGTACTGTCGCGCTGGAAGCCTCATCCTCAAGAGCGATGCTGCAAAGCCCCTCCTGGGCCATGATGCTGTGATCCAGGCATTAGCACAGAAAGGCCTGTATGTCACTGACCAGGAGAAACTGGTAACTGAAAGAGATCTCCACAAGAAACCCATACAGATG
Seq C2 exon
AGTGCACATTTGGCTATGATTGATACTCTAATGATGGCTTACACTGTAGAGATGATCAGCATAGAAAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATTGAGGATGCTGTCATGTACTGGATGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(5.5=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCCCTCCATCCCAACC
R:
TAGGGCAGATCTGTGGCTTGA
Band lengths:
297-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: