GgaEX1012725 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1408016-1435829:-
Coord C1 exon
chr8:1435677-1435829
Coord A exon
chr8:1425330-1425589
Coord C2 exon
chr8:1408016-1408177
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTTGGTCTTTGTAGAAA
3' ss Score
7.49
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGTCCCGTGGGAAGATGGGGGATGCCGCGGACACCAAGGAGATGAGGAAGACTTTCATTGTTCCTGCCATCAAACCCTTCGACCATTATGATTTCTCCCGAGCGAAAATCGCCTGTAATCTCGCCTGGCTCGTGGCCAAAGCCTTCGGGACAG
Seq A exon
AAAATGTTCCGGAAGAACTGCGAGAGCCGTTTTACACAGACCAGTACGACCAGGAGCACATTAAACCACCTGTAGTTAACTTGCTGCTATCTGCAGAACTCTACTGTCGTGCTGGGAGCCTTATTCTGAAAAGTGATGCTGCAAAACCACTTTTAGGTCATGATGCTGTTATACAAGCTCTGGCACAGAAAGGCCTTTATGTCACTGACCAAGAAAAATTGGTGACTGAACGAGATCTTCACAAAAAACCCATTCAGATG
Seq C2 exon
AGTGCTCATTTGGCTATGATCGATACTCTTATGATGGCGTATACCGTAGAGATGGTCAGCGTTGAGAAAGTGATTGCGTGCACTCAGCAGTATTCGTCTTTCTTCCAAGCGACGGATCTACCTTATGACATAGAGGATGCTGTCATGTTCTGGATAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(5.7=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGGAAGATGGGGGAT
R:
TCCAGAACATGACAGCATCCTC
Band lengths:
303-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]