GgaEX1012725 @ galGal4
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr8:1397026-1424865:-
Coord C1 exon
chr8:1424687-1424865
Coord A exon
chr8:1414340-1414599
Coord C2 exon
chr8:1397026-1397187
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTTGGTCTTTGTAGAAA
3' ss Score
7.49
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAACCATGTAAGTTCGGATTGCCGAGGGTCCCGTGGGAAGATGGGGGATGCCGCGGACACCAAGGAGATGAGGAAGACTTTCATTGTTCCTGCCATCAAACCCTTCGACCATTATGATTTCTCCCGAGCGAAAATCGCCTGTAATCTCGCCTGGCTCGTGGCCAAAGCCTTCGGGACAG
Seq A exon
AAAATGTTCCGGAAGAACTGCGAGAGCCGTTTTACACAGACCAGTACGACCAGGAGCACATTAAACCACCTGTAGTTAACTTGCTGCTATCTGCAGAACTCTACTGTCGTGCTGGGAGCCTTATTCTGAAAAGTGATGCTGCAAAACCACTTTTAGGTCATGATGCTGTTATACAAGCTCTGGCACAGAAAGGCCTTTATGTCACTGACCAAGAAAAATTGGTGACTGAACGAGATCTTCACAAAAAACCCATTCAGATG
Seq C2 exon
AGTGCTCATTTGGCTATGATCGATACTCTTATGATGGCGTATACCGTAGAGATGGTCAGCGTTGAGAAAGTGATTGCGTGCACTCAGCAGTATTCGTCTTTCTTCCAAGCGACGGATCTACCTTATGACATAGAGGATGCTGTCATGTTCTGGATAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'1-6,'1-3,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(5.7=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGTAAGTTCGGATTGCC
R:
AGGTAGATCCGTCGCTTGGAA
Band lengths:
300-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]