BtaEX6070989 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81285131-81289710:+
Coord C1 exon
chr16:81285131-81285247
Coord A exon
chr16:81285840-81286124
Coord C2 exon
chr16:81289685-81289710
Length
285 bp
Sequences
Splice sites
3' ss Seq
TTTTATACAAATCTTGTAAGAAC
3' ss Score
0.28
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTCGGGGCAGGAGTCAACGCTCGTTCTCGCCGGGCCTTCTTCCTGGGGAGTGGCCTGGCCTCCAGAGAGACACTCAGAGACTGGTCCCGTTGCTTAGCTGCCTGTCTGTCTCCCTGG
Seq A exon
AACGTTTCCCCCTTAATCTTTGTAGAGAATGTGCCAGAGGAGCTCCGAGAGCCGTTCTACACGGACCAGTATGACCAGGAGCACATCAAGCCGCCCGTGGTCGGCCTGCTGCTCTCGGCCGAGCTGTACTGCCGCGCCGGGAGCCTCATCCTCAGGAGCGACGCTGCGAAGCCCCTGCTGGGCCATGACGCCGTCATCCAGGCCTTGGCTCAGAAAGGCCTCTATGTCACCGACCAAGAGAAGCTGGTGACAGAGCGAGACTTGCACAAGAAGCCCATCCAGATG
Seq C2 exon
CTTTCCAGTCATGTTTGCATATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153-'0-2,'0-0,1-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]