RnoEX0016549 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53186001-53225349:-
Coord C1 exon
chr13:53224486-53225349
Coord A exon
chr13:53207564-53207823
Coord C2 exon
chr13:53186001-53186162
Length
260 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTAACCTTTATAGAAA
3' ss Score
7.74
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCGACGTGAAGCGGCCCAGGACTGCCCCCGGCCCGAGCATTCCGGGCCCTAAGCAAGCCGCCACCCCTCCTGCGAGCCCGTGTGGGACTAAAACGGGAGAACAAAAAGGAGCGGCGGGCAGGACCGGAACCGGAAGCGAGCAAGCGCCGGAGCGAGCGCGGAGCCGGTGCCCGCCTCACGGTCTAGGGCCCGGGGCCGCCGCGGCTCCCGCGGGCGGCGGCGGGCTCGCGACGAGCACAGCTGAGCTTTTCTGTGCCCGGCACCCGAGAGGGCCGCGACCGGCGCGGACGATCTGAACTCCCTTCTCCGCCACACCATGTGAAGGCCGTCGTCCCTCCATCCCGACCAGCCGCCTTGAAAGATGGGGGATGCTGCAGACCCGCGGGAGGTGAGAAGGACGTTCATTGTTCCAGCCATCAAACCCTTTGACCACTATGACTTCTCCAGAGCCAAAATCGCCTGCAATCTGGCCTGGCTGGTGGCCAAAGCCTTTGGGACAG
Seq A exon
AAACTGTGCCAGAGGAACTTCGAGAACCATTTTACACAGATCAGTATGACCAGGAACACATCAAGCCCCCTGTCGTTAACCTGCTTCTGTCAGCGGAGCTGTACTGTCGTGCTGGCAGTCTCATCCTCAAGAGTGACGCTGCAAAGCCCCTCCTGGGCCACGATGCTGTAATCCAGGCATTAGCACACAAAGGCCTGTATGTCACTGACCAGGAAAAACTGGTAACTGAAAGAGACCTCCACAAGAAACCCATACAGATG
Seq C2 exon
AGTGCACACTTGGCCATGATCGATACTCTAATGATGGCTTACACTGTAGAGATGGTCAGCATAGAGAAAGTAATTGCATGTGCTCAACAGTATTCAGCTTTTTTTCAAGCCACAGATCTGCCCTATGATATCGAGGATGCTGTCATGTACTGGATAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(5.7=16.7)
Main Skipping Isoform:
ENSRNOT00000060410fB2311
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCACAGCTGAGCTTTTCT
R:
ATCGATCATGGCCAAGTGTGC
Band lengths:
293-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]