DreEX0018724 @ danRer10
Exon Skipping
Gene
ENSDARG00000059965 | camsap2b
Description
calmodulin regulated spectrin-associated protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-070912-80]
Coordinates
chr2:45447063-45473296:+
Coord C1 exon
chr2:45447063-45447652
Coord A exon
chr2:45460381-45460640
Coord C2 exon
chr2:45473135-45473296
Length
260 bp
Sequences
Splice sites
3' ss Seq
CTCTCGCTTTCTCTCTTTAGACT
3' ss Score
10.53
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
CGGAAGAAATCATGACACCAAACGGTCAGCTCATCGATCGCCTCTCCTCGCCATTCAGCGTGACATCCCTCATCATGGCGCTCGTGTCACACATGAGATATTGATTTTTGGCATCGACACCAACTTGAGGATAATATGCCGGGAAACGGATGAGAACTAACGTTACCGCAGTCGCCTGGATTTGCTTTTTGGATATTGAATCCTGTGCTCGGGGGTTCGTTTTTCCACTCGTGTAGCCTAATTAGTGTTTGAGAGGAGAGTTACCGGATCCGTTATTTTCCAGATCATATTTGAGCATGGGAATGTCGTCTCTGAGCTCATAGTCCCGCGGGAAATGATGCAGCCGCGCGTGGACGTCAAGATGGGAGATGCCGCAGAGATCAAGGAGAGCAGGAGGACCTTCATCGTGCCCTCCATCAAATCTATGGATCACTATGACTTCAGCAGGGCCAAGATATCCTGCAGTTTGACGTGGCTCATCGCCAAAGCCTTTGGATCTG
Seq A exon
ACTGTGTGCCAGTGGAGTTGGAGGACCCTTTTTACCGGGACCAGTATGATCAGGAGCATGTGAAGCCTCCTGTTGTGTCTCTGCTTCTTTCTGCTGAGTTGTATTGTCGTGCGGGGAGTCTGATTCTCAGGAGCGACGCAGCTAAACCTCTTTTGGGTCATAACGCCGTCATCCAGGCCCTCGCTCAGAAAGCCCTGTATGTCACTGACCAGGAGAGACTCGTGACTGAGAGAGACCTCTGCAAGACCCCTATACAGATG
Seq C2 exon
AGCTCTCACCTGGCAATGATTGACACGTTAATGATGGCCTACACGGTTGAAATGGTCAGCGTAGAGCGAGTTCTAAGCTGCATCCAGAAATTCACTCCTTTCCTTCCTGAGGAAGACTTTCCTTATGATGCTGAAGAGGCTGTGACAACATGGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059965_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(6.2=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGTTACCGGATCCGT
R:
ACCATTTCAACCGTGTAGGCC
Band lengths:
304-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]