DreEX0022152 @ danRer10
Exon Skipping
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54665139-54671701:-
Coord C1 exon
chr16:54671467-54671701
Coord A exon
chr16:54665290-54665362
Coord C2 exon
chr16:54665139-54665205
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTCTGCAGAAA
3' ss Score
11.24
5' ss Seq
GATGTGTGT
5' ss Score
2.34
Exon sequences
Seq C1 exon
ATCCAGCTACCAGCAGCCATCCGGCGAGCGCAGGAGGAGCAGCAGACGCTACTGTCGGGACGAGCGGGAGGAGTTTGACCGAGACTACACCTTCACAGACGGATATTTCAGACACACACGCTCTCGAGATCACCGTACAGAGAGAGACAGCGGACGCAGACGGAGACGCCGCAGAACCAGGACCAGAACTCGATCCAGAACACGCTCATACAGCCAGAGCCGGTCCATATCATCA
Seq A exon
AAAGCGTGGGCGGTTAAAGACGATGAGGAGGGTCATCTGATCTATCGGGCCGGTGATGTGCTGCAGGACAGAT
Seq C2 exon
ACGAGATCACACAGACGCTCGGAGAGGGAACCTTCGGGAAAGTGGTGGAGTGTGTGGATCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.747 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(0.1=0.0)
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACACACGCTCTCGAGATCAC
R:
CACACACTCCACCACTTTCCC
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]