DreEX0028188 @ danRer10
Exon Skipping
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11617432-11618640:-
Coord C1 exon
chr22:11618558-11618640
Coord A exon
chr22:11618319-11618403
Coord C2 exon
chr22:11617432-11617524
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACCATGTTGTCATGTTTCAGGAA
3' ss Score
9.81
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCCGCGCGCAACAGACACACCGAGTTGTGCTGGATAATAACGAAATTCAGACCCGAGGCTTTCACATTTCACTCTTAAGATG
Seq A exon
GAAATCGGAAAGTGGCTTTTAGCAGCATTTGGAGTCGTGGTAATTGTGGTTTTAATAGCCGTCCCAACAGCCATTCTCCTCAAAG
Seq C2 exon
AGGATAAAAGTGAGCCTCAGAAGACTTTTACTCTCGAAGATTACTTCAATGGCACAGGAAGAACCAAGTCATATAACATGCGATGGGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAGACACACCGAGTTGT
R:
TGAAACCCATCGCATGTTATATGACT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]