MmuEX6101615 @ mm10
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62556101-62574075:-
Coord C1 exon
chr2:62573846-62574075
Coord A exon
chr2:62573439-62573523
Coord C2 exon
chr2:62556101-62556199
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCGAATTTTCTTCTATGTAGACA
3' ss Score
6.08
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAGAACGCCCCCAAAATCTGTTTCTAATTTTACAGAAATCTTTCGAAATTTGGCACGGTAGTCAAAAGTCCGTGGGAAAGGGAGGAGGGGAGCGGGAAGCAACTCATGTCCTGACTTCAGCTTCCAAGTGGAAGACAGACTTGCTTCTTTTCAACAGTTTTCACAGATGCGGTGACCCACGCTGTGCAGTGAGAATCAGCTAACTTGCAAAAACATCTGGAAAAATGAAG
Seq A exon
ACATGGCTGAAAACTGTCTTTGGAGTTACCACCCTGGCTGCGCTTGCTTTAGTGGTGATATGCATTGTCTTACGTCCCTCAAGAG
Seq C2 exon
TTTACAAACCTGAAGGAAACACAAAGAGAGCTCTTACCTTGAAGGATATTTTAAATGGAACATTCTCATATAAAACATATTTTCCCAACTGGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392-'1-4,'1-1,3-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGCAACTCATGTCCTG
R:
AGCTCTCTTTGTGTTTCCTTCAGG
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types