MmuEX6101615 @ mm9
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62394158-62412132:-
Coord C1 exon
chr2:62411903-62412132
Coord A exon
chr2:62411496-62411580
Coord C2 exon
chr2:62394158-62394256
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCGAATTTTCTTCTATGTAGACA
3' ss Score
6.08
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAGAACGCCCCCAAAATCTGTTTCTAATTTTACAGAAATCTTTCGAAATTTGGCACGGTAGTCAAAAGTCCGTGGGAAAGGGAGGAGGGGAGCGGGAAGCAACTCATGTCCTGACTTCAGCTTCCAAGTGGAAGACAGACTTGCTTCTTTTCAACAGTTTTCACAGATGCGGTGACCCACGCTGTGCAGTGAGAATCAGCTAACTTGCAAAAACATCTGGAAAAATGAAG
Seq A exon
ACATGGCTGAAAACTGTCTTTGGAGTTACCACCCTGGCTGCGCTTGCTTTAGTGGTGATATGCATTGTCTTACGTCCCTCAAGAG
Seq C2 exon
TTTACAAACCTGAAGGAAACACAAAGAGAGCTCTTACCTTGAAGGATATTTTAAATGGAACATTCTCATATAAAACATATTTTCCCAACTGGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGCAACTCATGTCCTG
R:
AGCTCTCTTTGTGTTTCCTTCAGG
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: