BtaEX6009491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008140 | FAP
Description
Bos taurus fibroblast activation protein, alpha (FAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001098001]
Coordinates
chr2:34299163-34317118:+
Coord C1 exon
chr2:34299163-34299344
Coord A exon
chr2:34299676-34299760
Coord C2 exon
chr2:34317020-34317118
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTATTTTATGTAGACA
3' ss Score
6.67
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAATCTTTTGAAATTTGGCACGGTTTTCGAAAGTCCGTGGAAAGAAAAAAAAAAAACTTGCCCCAGCTTCGACTTCCAACTACGAAGACAGACCTGCTTCTTTCAACGGTTTTCACAGATCTGTTGACCCACGCTCTGAAGTCAGAATTAGCTAACTTTCAAAAACATCTGGAAAAATGAAG
Seq A exon
ACATGGTTAAAAATTGTATTTGGAGTTGCCACCTCTGCCGTGCTTGCTTTACTGGTGATGTGTATTGTCTTACGTCCTTCAAGAG
Seq C2 exon
TTCACAACTCTGAAGAGAGTACAACACGAGCACTCACACTGAAGGATATTTTAAATGGGACATTTTCTTATAAAACATTTTTTCCAAATTGGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008140-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACTTGCCCCAGCTTCGA
R:
CAGTGTGAGTGCTCGTGTTGT
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]