GgaEX0016625 @ galGal3
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
NA
Coordinates
chr7:22639918-22648783:+
Coord C1 exon
chr7:22639918-22640018
Coord A exon
chr7:22640319-22640403
Coord C2 exon
chr7:22648688-22648783
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCTTCTGTCCTGCAGACC
3' ss Score
10.65
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAAACAGACACTGCCTTTTCCAACCCCTCTCCTCGATCCGCTGACCAACTCCCAGAAAAAGAGTTTGAGTTCTTTAGGAAGACTGCAGGAAAATGAAG
Seq A exon
ACCCGGCTAAAAGTACTATTTGGCGTGGTTGTATGTGTTTTGCTTTCCTTATTACTTATGTGTATTGTACTGCTTCCGTCCAAAG
Seq C2 exon
TTGTCACCACAGTTGATGGTCCTAGAGCTCTTACACTGGATGATTACTTGAATGGAAATTTTCAATATAAAACATATTTTCCATACTGGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAACCCCTCTCCTCGATC
R:
TGACACCCAGTATGGAAAATATGT
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]