DreEX6038696 @ danRer10
Exon Skipping
Gene
ENSDARG00000078468 | fap
Description
fibroblast activation protein, alpha [Source:ZFIN;Acc:ZDB-GENE-081104-439]
Coordinates
chr9:51693922-51696823:+
Coord C1 exon
chr9:51693922-51694177
Coord A exon
chr9:51694369-51694453
Coord C2 exon
chr9:51696731-51696823
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTCCTCACCTGCAGGGC
3' ss Score
11.67
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAAGTCACTGCGATGGAAAGTTATGCAAAGAGCTGATTCTGAGAAACTTTTACCACACCAGACTCAATGATGCATCGGAGGAAGTACATTTTTAACCTGGAAAACTGCAATCGGACGGAATAAAGCGCAGCAGTCTGTCCAAGACTTGCACTACAGCGGACAAAGGTGATTAAACGATCTGCTTTAAGGACATCTGGAGATCTTCTCAGCGGATTCCTGTGGATTGGATGCGCTTGGAAGTTTCTGCGCAATTATG
Seq A exon
GGCTGTAATAAGGTGTGCGTGGCGCTGGTCGGGGCGGTTGTCGTCATCACGCTCATCGCAATTCCCACGGCAATTTACGTCAACA
Seq C2 exon
GAGATGATTCTGCATTAAAGAGGACGTACTCTTTTGATGATTTTTACAATGACACTATCAGGTATAAAACATACAACCTCCGCTGGATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078468-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATCTGCTTTAAGGACATCTGG
R:
TCCAGCGGAGGTTGTATGTTT
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]