GgaEX0016625 @ galGal4
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20574636-20583551:+
Coord C1 exon
chr7:20574636-20574788
Coord A exon
chr7:20575089-20575173
Coord C2 exon
chr7:20583456-20583551
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCTTCTGTCCTGCAGACC
3' ss Score
10.65
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TTTGCAAAAGTATGTAGGAAAAAAAAGTCTGCCAGAGGTTTGGCCTCTAACTGTGAAAACAGACACTGCCTTTTCCAACCCCTCTCCTCGATCCGCTGACCAACTCCCAGAAAAAGAGTTTGAGTTCTTTAGGAAGACTGCAGGAAAATGAAG
Seq A exon
ACCCGGCTAAAAGTACTATTTGGCGTGGTTGTATGTGTTTTGCTTTCCTTATTACTTATGTGTATTGTACTGCTTCCGTCCAAAG
Seq C2 exon
TTGTCACCACAGTTGATGGTCCTAGAGCTCTTACACTGGATGATTACTTGAATGGAAATTTTCAATATAAAACATATTTTCCATACTGGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTCTGCCAGAGGTTTGG
R:
CCAGTGTAAGAGCTCTAGGACCA
Band lengths:
170-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]