RnoEX6017061 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48519863-48535909:-
Coord C1 exon
chr3:48535907-48535909
Coord A exon
chr3:48535819-48535903
Coord C2 exon
chr3:48519863-48519961
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTACTCTATGTAGACA
3' ss Score
6.69
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATG
Seq A exon
ACATGGCTGAAAACTGTCTTTGGAGTCACTACTTTGGTTGCGCTTGCTCTAGTGGTGATATGCATTGTCTTACGTCCCTCAAGAG
Seq C2 exon
TTTACAGCCCTGAAGGCAACACAGGAAGATCTCTTACCCTGAAGGATATTTTAAATGGAACATTCTCCTATAAAACATATTTTCCAAACTGGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]