HsaEX6016265 @ hg19
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein, alpha [Source:HGNC Symbol;Acc:3590]
Coordinates
chr2:163083033-163099980:-
Coord C1 exon
chr2:163099832-163099980
Coord A exon
chr2:163099418-163099502
Coord C2 exon
chr2:163083033-163083131
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTATTTTATGTAGACT
3' ss Score
6.34
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAGTCCGTGGAAAGAAAAAAACCTTGTCCTGGCTTCAGCTTCCAACTACAAAGACAGACTTGGTCCTTTTCAACGGTTTTCACAGATCCAGTGACCCACGCTCTGAAGACAGAATTAGCTAACTTTCAAAAACATCTGGAAAAATGAAG
Seq A exon
ACTTGGGTAAAAATCGTATTTGGAGTTGCCACCTCTGCTGTGCTTGCCTTATTGGTGATGTGCATTGTCTTACGCCCTTCAAGAG
Seq C2 exon
TTCATAACTCTGAAGAAAATACAATGAGAGCACTCACACTGAAGGATATTTTAAATGGAACATTTTCTTATAAAACATTTTTTCCAAACTGGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098-'2-10,'2-6,3-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTTGTCCTGGCTTCAGC
R:
TCCTTCAGTGTGAGTGCTCTCA
Band lengths:
177-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)