DreEX0033178 @ danRer10
Exon Skipping
Gene
ENSDARG00000036156 | fnbp1a
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11548387-11553309:-
Coord C1 exon
chr8:11553130-11553309
Coord A exon
chr8:11551179-11551361
Coord C2 exon
chr8:11548387-11548401
Length
183 bp
Sequences
Splice sites
3' ss Seq
CATCACACCCTCATCTGTAGCTT
3' ss Score
5.17
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACAGTAAGCAAGTCGTAGAATCATACAAGTCTGGCTTCGAGCCGCCGGGTGACGTGGATTTTGAGGACTACAGCGTGTCGATGAAGAGAGCAGTGTCTGAATCTAGCTTTCTGAACGCCCGCGGAGAGAGCAGACGCCGGAGCAGGAGCAAACTGTGGCCTTTACTCAAGAGAAATAAG
Seq A exon
CTTATGTCTTTGTTAGCATCGCCCCGTCAGCCCCCTCCCCCTCCCCCCACCTCCCCATCCCCGGACGGCCTCCAGAACGGCCCCCAGTCCCCGCAGCAGCCCAAGGAGCCCCTGAGCCAGCGTCTCAATGACTTCATGGGCACCAAACACAAAATGCACTGCCTGCGGAGCCTCAAACGTGGG
Seq C2 exon
CTTTCTCTAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.902 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]