Special

DreEX0040315 @ danRer10

Exon Skipping

Gene
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39947267-39947959:+
Coord C1 exon
chr6:39947267-39947362
Coord A exon
chr6:39947568-39947612
Coord C2 exon
chr6:39947805-39947959
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTCACCTTATTGTGATCAGGTA
3' ss Score
6.78
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTGGTTCAGCATGATCCCTGCCGAGGTGGAGCCGGCTACTGGAACAGCCTCTTTAGGTTTAAACACTTAGCCACCGGCCATTACCTTGCTGCAGAG
Seq A exon
GTAAATCCAGACTATGAAGAAGAATGCCTGGAGTCCCGCTCCTCT
Seq C2 exon
ATGGATTCGGAGCATGAAGTGATTCGGGCTCGTGCACGTAACCCTCAGGATAAGGTGATGTACACACTGGTGTCTGTTCCTGATGGAAATGACATATCCTCCATCTTTGAGCTTGACCCTACAACTTTGAGGGGCGGAGACTCACTTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.333 C2=0.173
Domain overlap (PFAM):

C1:
PF0281514=MIR=FE(15.4=100)
A:
PF0281514=MIR=FE(7.0=100)
C2:
PF0281514=MIR=FE(25.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATTACCTTGCTGCAGAG
R:
GGGTCAAGCTCAAAGATGGAGG
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]