DreEX0040866 @ danRer10
Exon Skipping
Gene
ENSDARG00000024167 | kcnh1a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 1a [Source:ZFIN;Acc:ZDB-GENE-061226-1]
Coordinates
chr17:25658985-25666913:+
Coord C1 exon
chr17:25658985-25659179
Coord A exon
chr17:25664156-25664279
Coord C2 exon
chr17:25666807-25666913
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGCTCTTTCCACAGACA
3' ss Score
11.48
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGGAAAGCGCGAGGAGCCCCGGGTCCACACATCACTGGATGCGGCAGCGGCATGTGGACGACAGACTCACCGGAGACGCGCTGACCGGTCCGGGCTCTCAGTGGAGCGCATGACCCGCCGTGATGGCCGGGGGACGCAGAGGACTAGTGGCTCCTCAGAACACTTTTCTGGAAAATATTGTCCGACGGTCTAACG
Seq A exon
ACACGAACTTTGTGTTGGGGAATGCTCAGATCGTAGACTGGCCCATCGTTTACAGCAATGATGGCTTTTGTAAGCTCTCCGGCTACCACCGTGCTGAAGTCATGCAGAAAAGCAGCACTTGCAG
Seq C2 exon
CTTCATGTATGGAGAGCTCACAGACAAGGACACAAGTGAAAAAGTTCGACTAACCTTCGAAAACTATGAGATGAACTCGTTTGAGATCTTGATGTACAAGAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024167-'0-2,'0-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134261=PAS_9=PU(35.8=90.5)
C2:
PF134261=PAS_9=FE(34.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTGGACGACAGACTCAC
R:
TGTACATCAAGATCTCAAACGAGT
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]