DreEX0049760 @ danRer10
Exon Skipping
Gene
ENSDARG00000104225 | ndel1b
Description
nudE neurodevelopment protein 1-like 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5889]
Coordinates
chr3:44448610-44458066:-
Coord C1 exon
chr3:44457972-44458066
Coord A exon
chr3:44451309-44451462
Coord C2 exon
chr3:44448610-44448758
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTTCATGTTTGCAGTTG
3' ss Score
8.5
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTCTCCACCATGGACACAGAGATGATGCCAAAATTCTCCTCAAAAGACGAGGAAATCGATTACTGGAAGTGTTTGTCTCTCAAATACAAAAAGAG
Seq A exon
TTGTCATGATGCTCAGGAAGAGCTGCAGGAGTTTCAGGAAGGCAGTCGGGAGTTGGAGGCCGAGCTGGAGGCTCAGCTGGGTCAGGCAGAACACCGCATCCGAGACCTGCAGTCCGAGAACCAAAGGCTGAAGAGCGAGGTGGACATACTCAAG
Seq C2 exon
GAGAAACTAGAGCAGCAGTATGCACAGAGCTATAAGCAGATCTCCATGCTGGAGGACGACCTGCTCCAAACACGCGGCATCAAGGAACAACTGCACAAATACGTCAGAGAGCTGGAGCAGGCCAACGATGACCTGGAGAGAGCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104225-'1-4,'1-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.481 C2=0.140
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=PU(24.6=58.6)
A:
PF079267=TPR_MLP1_2=FE(73.9=100),PF053776=FlaC_arch=PU(58.5=59.6),PF0218313=HALZ=PU(78.8=50.0)
C2:
PF053776=FlaC_arch=PD(37.7=40.0),PF0218313=HALZ=PD(15.2=10.0)
Main Skipping Isoform:
ENSDART00000169923fB4166
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCACCATGGACACAGAGA
R:
CTCTTGGCTCTCTCCAGGTCA
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]