DreEX0064315 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48857219-48859598:+
Coord C1 exon
chr17:48857219-48857375
Coord A exon
chr17:48857551-48857681
Coord C2 exon
chr17:48859460-48859598
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTCGTTATTTTCATGTGCAGATT
3' ss Score
8.92
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATTGCTTGGGCTCTGAATAAAGGAGTCAAACAGGAGTACAAGCAGTTCTGGGATGTGGACCTCGGGGTCACTTATATCCCGTGGGAGAAGGTGAAACTGGATGACCTGGATGACTTTGCTGAGGGAGGCATGATTGACCAGGAGACGGTCAACAACG
Seq A exon
ATTGGGAATCACAAAGGAATACGGAGACAGCCAAAGAGACTCCGAGTCAGCCAGTTAAAGCTGAAGCAAGTACAGCCAGCAGCACAGCCAGTGAGGCCTTCACACAGCCGGTCACTATGATGCCCATGCAG
Seq C2 exon
ATTCCAGTGCCACAGACAGTCCCTGCTGTTGGCCTCGTTCCTCCATCCTTCCCTGTCACCATGGCAATGCCCCCACCAGGCTTCGGTCCCCCTCCACCTTTTCTAAGGGCAGGGTTTAATGCCTCCCAGCCTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'16-20,'16-19,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=0.977 C2=0.851
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCAGTTCTGGGATGTGG
R:
GAGGCTGGGAGGCATTAAACC
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]