GgaEX1050986 @ galGal4
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49629209-49631973:+
Coord C1 exon
chr3:49629209-49629365
Coord A exon
chr3:49630467-49630597
Coord C2 exon
chr3:49631829-49631973
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTTTAATAAAGAAT
3' ss Score
3.98
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATTGCCTGGGCTTTAAATAAAGGTGTAAAAACAGAGTATAAGCAATTCTGGGATGTGGATCTGGGAGTTTCATATATTCCTTGGGAGAAGGTAAAATTGGATGATTTGGAGGGCTTTGCTGAGGGTGGCATGATTGACCAGGAGACAGTAAATACAG
Seq A exon
AATGGGAAACAGCGAGGAGCTCAGAACCTGCTAAAGAAAATATTCAAACTACGCAGAGTACTGCAGTTGATAAGAGCACAGTGATTACAACGCAGACGGAAGCTTACACACAACCGGTCACTATGCTACAG
Seq C2 exon
ATTCCAGTAGCTCCAGCTGTGCCTGCTGTTAGCTTAGTTCCACCTGCATTTCCTGTCACAATGTCTGTCCCTCCTCCTGGTTATAGTGCCATTCCTCCTCCACCCTTCTTGCGAGCAAGTTTCAATCCTTCACAGCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635_MULTIEX1-12/13=11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.727 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATGTGGATCTGGGAGT
R:
GGAGGTGGCTGTGAAGGATTG
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]