GgaEX1050986 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52250734-52253498:+
Coord C1 exon
chr3:52250734-52250890
Coord A exon
chr3:52251992-52252122
Coord C2 exon
chr3:52253348-52253498
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTTTAATAAAGAAT
3' ss Score
3.98
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATTGCCTGGGCTTTAAATAAAGGTGTAAAAACAGAGTATAAGCAATTCTGGGATGTGGATCTGGGAGTTTCATATATTCCTTGGGAGAAGGTAAAATTGGATGATTTGGAGGGCTTTGCTGAGGGTGGCATGATTGACCAGGAGACAGTAAATACAG
Seq A exon
AATGGGAAACAGCGAGGAGCTCAGAACCTGCTAAAGAAAATATTCAAACTACGCAGAGTACTGCAGTTGATAAGAGCACAGTGATTACAACGCAGACGGAAGCTTACACACAACCGGTCACTATGCTACAG
Seq C2 exon
AAAAAGATTCCAGTAGCTCCAGCTGTGCCTGCTGTTAGCTTAGTTCCACCTGCATTTCCTGTCACAATGTCTGTCCCTCCTCCTGGTTATAGTGCCATTCCTCCTCCACCCTTCTTGCGAGCAAGTTTCAATCCTTCACAGCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'18-25,'18-24,19-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.727 C2=0.412
Domain overlap (PFAM):
C1:
PF120393=DUF3525=PU(41.0=60.4)
A:
PF120393=DUF3525=FE(55.1=100)
C2:
PF120393=DUF3525=PD(1.3=2.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATGTGGATCTGGGAGTT
R:
GGAGGTGGCTGTGAAGGATTG
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]