HsaEX0052630 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155141311-155145512:+
Coord C1 exon
chr6:155141311-155141467
Coord A exon
chr6:155143410-155143543
Coord C2 exon
chr6:155145368-155145512
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTTCAACTATTTTGTTTAGAGT
3' ss Score
4.64
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATCGCTTGGGCTTTAAACAAAGGTGTAAAAACAGAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACATATATACCATGGGAAAAAGTTAAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAGACTGTAAATACTG
Seq A exon
AGTGGGAAACTGTGAAAAGCTCAGAACCTGTTAAAGAGACGGTCCAGACAACTCAGAGCCCAACTCCAGTTGAAAAGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCTCCTGTTGCTATGTTGCAG
Seq C2 exon
ATTCCAGTGGCGCCAGCCGTGCCTACAGTTAGTTTAGTCCCACCAGCATTTCCTGTGTCGATGCCGGTTCCTCCTCCTGGATTCAGTCCAATCCCTCCACCTCCTTTTTTAAGAGCAAGTTTTAACCCTTCACAACCACCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.711 C2=0.490
Domain overlap (PFAM):
C1:
PF120393=DUF3525=PU(42.7=60.4)
A:
PF120393=DUF3525=PD(56.0=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTGGGCTTTAAACAAAGGT
R:
GAGGTGGAGGGATTGGACTGA
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)