RnoEX6000743 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44084609-44113825:+
Coord C1 exon
chr1:44084609-44084765
Coord A exon
chr1:44112085-44112218
Coord C2 exon
chr1:44113681-44113825
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTTCAAATATTTTACTTAGAAT
3' ss Score
4.56
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATTGCCTGGGCTTTGAACAAAGGTGTAAAGACAGAATACAAACAGTTCTGGGACGTGGATCTTGGAGTCACATATATACCCTGGGAAAAAGTTAAAGTAGATGACTTGGATGGCTTTGCAGAGGGAGGCATGATTGATCAGGAAACTGTAAATGCTG
Seq A exon
AATGGGAAACTGTGAAAACCTCAGAACCCGTTAAAGAGACTGTCCAGACGACACAGAGTCCAGCTGCAGTTGAGAAGGAGACAGTGGTCACAACGCAGTCAGAGGTTTTCCCTCCTCCTGTCACCATGCTGCAG
Seq C2 exon
ATTCCTGTAGCACCAACCGTTCCTGCAGTTAGCTTAGTTCCACCAGCGTTTCCTGTGTCGATGCCTGTCCCCCCTCCTGGATTCAGCCCCATCCCTCCACCTCCTTTTCTACGAGCAAGTTTTAACCCTTCACAACCACCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'25-27,'25-25,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.756 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGACGTGGATCTTGGA
R:
AGGAGGTGGTTGTGAAGGGTT
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]