BtaEX6050094 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92861922-92866033:+
Coord C1 exon
chr9:92861922-92862078
Coord A exon
chr9:92863946-92864079
Coord C2 exon
chr9:92865889-92866033
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTTCAAATATTTTATTTAGAGT
3' ss Score
5.33
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATTGCTTGGGCTTTAAACAAAGGTGTGAAAACAGAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACGTATATACCATGGGAGAAAGTTAAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAAACTGTAAATACTG
Seq A exon
AGTGGGAAACGGTGAAAAGCTCAGAACCTGTTAAAGAGACGGTCCAGACAACTCAGAGCCCACCTCCAGCTGAAAAGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCACCTGTTGCTATGTTACAG
Seq C2 exon
ATTCCGGTAGCTCCAGCAGTGCCTGCAGTTAATTTAGTACCACCAACATTTCCTGTGTCAATGCCAGTTCCTCCTCCCGGCTTCAGTCCAATCCCTCCGCCTCCTTTTCTCCGAGCAAGTTTCAACCCTTCACAACCACCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'23-22,'23-20,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.733 C2=0.531
Domain overlap (PFAM):
C1:
PF120393=DUF3525=PU(42.7=60.4)
A:
PF120393=DUF3525=PD(56.0=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGATGTGGATCTTGGAGT
R:
CGGTGGTTGTGAAGGGTTGAA
Band lengths:
252-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]