HsaEX1046660 @ hg38
Exon Skipping
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154820177-154824378:+
Coord C1 exon
chr6:154820177-154820333
Coord A exon
chr6:154822276-154822409
Coord C2 exon
chr6:154824234-154824378
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTTCAACTATTTTGTTTAGAGT
3' ss Score
4.64
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ATCGCTTGGGCTTTAAACAAAGGTGTAAAAACAGAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACATATATACCATGGGAAAAAGTTAAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAGACTGTAAATACTG
Seq A exon
AGTGGGAAACTGTGAAAAGCTCAGAACCTGTTAAAGAGACGGTCCAGACAACTCAGAGCCCAACTCCAGTTGAAAAGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCTCCTGTTGCTATGTTGCAG
Seq C2 exon
ATTCCAGTGGCGCCAGCCGTGCCTACAGTTAGTTTAGTCCCACCAGCATTTCCTGTGTCGATGCCGGTTCCTCCTCCTGGATTCAGTCCAATCCCTCCACCTCCTTTTTTAAGAGCAAGTTTTAACCCTTCACAACCACCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.711 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000367186fB25171
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTGGGCTTTAAACAAAGGT
R:
GAGGTGGAGGGATTGGACTGA
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains